Simpathic Sample

The updated Simpathic sample type, which aggregates both the information of the observation unit as well as the sample.

Attributes

Name	Type	Description	PID	Unit
sample identifier*	String	The sample identifier.	https://simpathic.sample.field1	-
observation unit type	String	The observation unit type	https://simpathic.sample.field3	-
observation unit description	String	A description of the observation unit	https://simpathic.sample.field4	-
study identifier	String	The unique identifier of the study to which the observation unit is associated	https://simpathic.sample.field5	-
karyotype	String	The karyotype of the observation unit	https://simpathic.sample.field6	-
year of birth	String	The year of birth associated with the observation unit	https://simpathic.sample.field7	-
gender	String	The gender associated with the observation unit	https://simpathic.sample.field8	-
genotype	String	The genotype associated with the observation unit	https://simpathic.sample.field9	-
genotype identifier	String	The genotype identifier associated with the observation unit	https://simpathic.sample.field10	-
phenotype	String	The phenotype associated with the observation unit	https://simpathic.sample.field11	-
phenotype identifier	String	The phenotype identifier associated with the observation unit	https://simpathic.sample.field12	-
pseudo patient identifier	String	The pseudo paitient identifier associated with the observation unit	https://simpathic.sample.field13	-
sample description	String	The description of the sample	https://simpathic.sample.field15	-
ncbi taxonomy identifier	NCBI ID	NCBI taxonomy identifier of the sample	https://simpathic.sample.field16	-
scientific name	String	The scientific name of the sample	https://simpathic.sample.field17	-
biosafety level	String	The biosafety level associated with the sample	https://simpathic.sample.field18	-
sample observation unit identifier	String	The identifier of the observation unit that is associated with the sample	https://simpathic.sample.field19	-
comments on changes	String	Comments on the changes associated with the sample	https://simpathic.sample.field20	-
culturing strategy	String	The culturing strategy associated with the sample	https://simpathic.sample.field21	-
transduction protocol	String	The transduction protocol associated with the sample	https://simpathic.sample.field22	-
differentiation protocol	String	The differentiation protocol associated with the sample	https://simpathic.sample.field23	-
days in vitro	Real number	The number of days in vitro associated with the sample	https://simpathic.sample.field24	-
karyotyping	String	The karyotyping associated with the sample	https://simpathic.sample.field25	-
target gene identifier	String	The target gene identifier associated with the sample	https://simpathic.sample.field26	-
target gene annotation	String	The target gene annotation associated with the sample	https://simpathic.sample.field27	-
sampling timestamp	Date time	The timestam of the sample	https://simpathic.sample.field28	-
tissues from which cells were derived	String	The tissues from which cells were derived, that are associated with the sample	https://simpathic.sample.field29	-
age at sampling from the host	String	The host's age at sampling	https://simpathic.sample.field30	-
cell line background	String	The cell line background of the sample	https://simpathic.sample.field31	-
target gene	String	The target gene associated with the sample	https://simpathic.sample.field32	-
sample phenotype	String	The phenotype associated with the sample	https://simpathic.sample.field33	-
sample concentration	String	The sample concentration	https://simpathic.sample.field34	-
sample concentration unit	String	The unit of the sample concentration	https://simpathic.sample.field35	-
DNA quality 260/230	String	The 260/230 DNA quality	https://simpathic.sample.field36	-
DNA quality 260/280	String	The 260/280 DNA quality	https://simpathic.sample.field37	-

Name

Type

Description

PID

Unit

sample identifier*

String

The sample identifier.

https://simpathic.sample.field1

observation unit type

String

The observation unit type

https://simpathic.sample.field3

observation unit description

String

A description of the observation unit

https://simpathic.sample.field4

study identifier

String

The unique identifier of the study to which the observation unit is associated

https://simpathic.sample.field5

karyotype

String

The karyotype of the observation unit

https://simpathic.sample.field6

year of birth

String

The year of birth associated with the observation unit

https://simpathic.sample.field7

gender

String

The gender associated with the observation unit

https://simpathic.sample.field8

genotype

String

The genotype associated with the observation unit

https://simpathic.sample.field9

genotype identifier

String

The genotype identifier associated with the observation unit

https://simpathic.sample.field10

phenotype

String

The phenotype associated with the observation unit

https://simpathic.sample.field11

phenotype identifier

String

The phenotype identifier associated with the observation unit

https://simpathic.sample.field12

pseudo patient identifier

String

The pseudo paitient identifier associated with the observation unit

https://simpathic.sample.field13

sample description

String

The description of the sample

https://simpathic.sample.field15

ncbi taxonomy identifier

NCBI ID

NCBI taxonomy identifier of the sample

https://simpathic.sample.field16

scientific name

String

The scientific name of the sample

https://simpathic.sample.field17

biosafety level

String

The biosafety level associated with the sample

https://simpathic.sample.field18

sample observation unit identifier

String

The identifier of the observation unit that is associated with the sample

https://simpathic.sample.field19

comments on changes

String

Comments on the changes associated with the sample

https://simpathic.sample.field20

culturing strategy

String

The culturing strategy associated with the sample

https://simpathic.sample.field21

transduction protocol

String

The transduction protocol associated with the sample

https://simpathic.sample.field22

differentiation protocol

String

The differentiation protocol associated with the sample

https://simpathic.sample.field23

days in vitro

Real number

The number of days in vitro associated with the sample

https://simpathic.sample.field24

karyotyping

String

The karyotyping associated with the sample

https://simpathic.sample.field25

target gene identifier

String

The target gene identifier associated with the sample

https://simpathic.sample.field26

target gene annotation

String

The target gene annotation associated with the sample

https://simpathic.sample.field27

sampling timestamp

Date time

The timestam of the sample

https://simpathic.sample.field28

tissues from which cells were derived

String

The tissues from which cells were derived, that are associated with the sample

https://simpathic.sample.field29

age at sampling from the host

String

The host's age at sampling

https://simpathic.sample.field30

cell line background

String

The cell line background of the sample

https://simpathic.sample.field31

target gene

String

The target gene associated with the sample

https://simpathic.sample.field32

sample phenotype

String

The phenotype associated with the sample

https://simpathic.sample.field33

sample concentration

String

The sample concentration

https://simpathic.sample.field34

sample concentration unit

String

The unit of the sample concentration

https://simpathic.sample.field35

DNA quality 260/230

String

The 260/230 DNA quality

https://simpathic.sample.field36

DNA quality 260/280

String

The 260/280 DNA quality

https://simpathic.sample.field37

Simpathic Sample

Attributes

Tags

Creator

Submitter

Simpathic Sample

Attributes

Tags

Creator

Submitter

Related items